| Basic Information | |
|---|---|
| Taxon OID | 3300027791 Open in IMG/M |
| Scaffold ID | Ga0209830_10011240 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5646 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 77.0991 | Long. (o) | -150.2252 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008174 | Metagenome / Metatranscriptome | 337 | Y |
| F018611 | Metagenome / Metatranscriptome | 234 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209830_100112401 | F018611 | N/A | EITERSPFVSTHSLEQFTPTVEEELGKGMIRCERNTLVSSFKNSLGPAVNVGAQAYSAGKDFQQDIKEGGGVAVETAKIGLDAAKNAEEYVVDNMIMDAGIAAAPETFGLSLLVAGAATVIHNLAVDSIVNVAKSTVSKMKHFFKKLF |
| Ga0209830_100112404 | F008174 | N/A | MTHRARGCPFIANVDGEDFAIDGFAKYKGYGDECKTIYFAGVALFQDEENKENGDLVFPFCFEYSYETDDSKHFSDEIVENDFAYFIVENYEQSCRNVKEVLKRRE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |