NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209273_10032562

Scaffold Ga0209273_10032562


Overview

Basic Information
Taxon OID3300027790 Open in IMG/M
Scaffold IDGa0209273_10032562 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2483
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F019836Metagenome / Metatranscriptome227Y
F061271Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0209273_100325621F019836N/AMQKENLQLPVKQFHQLYDLLGDILDHESETNDFNMENNDIELIEDIRTELFNQIPDEKTYTDYALTGRSSNSSIQAGKLYKIVEQTSKYGFKLEVEDGEEIFCLFKNCAFLNGRDWTIINVEN
Ga0209273_100325625F061271N/AMIQELDKVVHQWCDSNDRWMYIEYDRDGIVMGLNFMQGDEYECFKKSWCVSDIGLTEFYKQMLYTFAYEQKNVPEHCFINSCMWSYHSAISEYKDNNCKIGNAKKCCKAISGR
Ga0209273_100325627F005129N/AMKYKVKIEDRSLSINLMHCSVIDLGIFTVKATTHTFLFEAKDTDWGADINETELEFYVNNKRCKYVGFKELYTQLYGNSFVTWEADIIRQTEEEVAKRIVKEYPGTDVNY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.