NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209448_10000280

Scaffold Ga0209448_10000280


Overview

Basic Information
Taxon OID3300027783 Open in IMG/M
Scaffold IDGa0209448_10000280 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18066
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003670Metagenome / Metatranscriptome474Y
F003701Metagenome / Metatranscriptome473Y
F042443Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209448_1000028011F003701GAGMRKCCLLFCLLLAGCAAKKQPVATTAPPIRSQLPPATAEIVEHCVIVKQENANTVTCSCLPVTTVIDSKTGHTKLVCKKMKEEK
Ga0209448_1000028014F042443AGGAGMSMSMSTLVVIGLLFLAWVFIKRVLPMLIVRQMGRFALKKVGESAIAKVPEQIQFTRAAAPQWKDEAAMQRQATPLVRAGFSDLGTYSVDKMPGALIRVLFQSQTHVSAQICEHPRSGGWTEFATRYIDGGSDYLTTLPDQGIAPPPFARTSRADKSTPTDRLYQQHLAQRKSAGIKPVAASEVVHEMEDAYLRYMVWKKNKGLTPEEVAHATVKWAKAKQQAAGQS
Ga0209448_100002806F003670AGGAVKIRLAACLFFLTVFLSPVSARASSHPAKPADVSDPGYAFALAAANHFLHAWQTADAENGMVMLSDHIRHTQNPDQLEQFFFSATDRAFEITRGHGHPGRYSFPVVLVTPRGSHVTRKFSEIILIETGKNDWVVDKLP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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