Scaffold Ga0209500_10045204

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209500_10045204

Scaffold Ga0209500_10045204

Overview

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10045204 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2387
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F012669	Metagenome / Metatranscriptome	278	Y
F014847	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100452044	F014847	AGG	MEFESNTDILRDLMNQIHTLHKENAKLRQEVEQLEEINSELNRKLKSIQALFL
Ga0209500_100452045	F000962	GGA	LLRICVYHNDFTIGFPKSDMNIHVSDEIKAKYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNVS
Ga0209500_100452046	F012669	N/A	MNEQTYMNLKDVVKLKRPELDVKKINRENKHFKHLVDSYMNWNQPRGPYDYDEPRSTYEDDIIECIGYYNWDGFALAQHLSEYKYIEPDSDLVHILEDVISVKSSLEIEIEIQWVKENFLTISDDVIGKKVNVKQGYKKYENHYITTIRPDTYEVTISDDINKKGGWVIKYEDVTLL

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