NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10013284

Scaffold Ga0209500_10013284


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10013284 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4994
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F027417Metagenome194Y
F083901Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1001328411F000821AGGAGGMNEEYLSAKANLCLNQAEKDLKENEIAKAIKNLERANSALSRIFNLEEDEND
Ga0209500_1001328414F027417N/AMGYNYRVTFVTDYLTIITNVELELDDTTGNYSGEAYEQAAINGKNNIEDEIGKIDETIINDITVTLILDDEEIELEGEDE
Ga0209500_100132848F083901GGAGGMTQPTKSKSVLTYRTYRKARDRALIRLSHLYPDTYKQLLAIERKFDEKEGKDWTGIDELINLSVGTHTRANGTPPFGDPADAGEDEGYYGGEA
Ga0209500_100132849F001477AGGAGGVSRILRFDSKGEPFLGDPPSNIYTIHPKKSPLILLYEVVDEDGVAEWGGENAEHCMQWLSLAPTGSRVLVSGWDSDEEDAHLVGQPLDITDIIKAASL
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