| Basic Information | |
|---|---|
| Taxon OID | 3300027782 Open in IMG/M |
| Scaffold ID | Ga0209500_10013009 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5063 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001733 | Metagenome / Metatranscriptome | 644 | Y |
| F007170 | Metagenome / Metatranscriptome | 356 | N |
| F009888 | Metagenome / Metatranscriptome | 311 | N |
| F056616 | Metagenome / Metatranscriptome | 137 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209500_100130092 | F056616 | AGGAG | MPFTKSFGLVGENCTVTIAFGGFQDGSPSAFTANTYTCLAKSVRTSTSVDTADVSALCDTTKKMQVTKASGSVEIELLVDGTQQADGSPVFFNKEGYYCQIVVTPGALSAKTFVGIVTATGISIASGEAVSETATIMLGANGVAAAWTSA |
| Ga0209500_100130093 | F007170 | AGG | MAYEPAVIEQWIYETLSGDATLLGLLAPDNQPNGYQMGIYNTVAPQTDPVSRRPVQVPYVVFSRAGASGEDEDTLCGARVFTYPNYRITVWDTESGAMSMARIQTIMNRIDTLLDNQTVTSTTPRLYVRRVSTDQTFVLSDGGRTDYGVTAVYRCLTQQ |
| Ga0209500_100130095 | F009888 | AGG | VALIFDLTEDPQQVLQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIQTGASYSFGSGSVTLTKQYSAQGILSVLNPAAYPTAANIRLTVSFTVSTTVRRFGPLEVEVLAP |
| Ga0209500_100130099 | F001733 | GGAGG | MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAKDISELGAVLALYGSKAVAAGVSSAVSSVLAFLTMPFKGTGINALKVGK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |