NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10002301

Scaffold Ga0209500_10002301


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10002301 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13710
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051128Metagenome / Metatranscriptome144N
F087184Metagenome / Metatranscriptome110N
F093301Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000230113F093301N/AVAIQGDGWSVIGCDSRSSDETGRYLEMATHKVVENNGILIAGSGAGRGSNILQFGWRAPRPKAGQNLDVFMTKVFIPSMRKVFIESGYDMKADGEAAAHDSEFIVSIHGVLYPVYEDYSWDREERNVYHSGSGSDLALGVLEALNYQKCKTAKEAEKIVYRAVEIAIKHDIYSGGSIHTFIQEE
Ga0209500_1000230114F087184AGGAMEQLVSDIESGTFDLSLTKIKEAVDERLKALRVSRTMSDYHVGDTVVFNDLTGTRYMVGRKATVTGMKQKKVVVRLETPVGRFEKINPATGKSESADIVVPVAIIDLVK
Ga0209500_100023013F051128AGGMAHTPDLPRSEVDLLASLSKDKLWRRVKDLNDAGWTLQSIADAFSPPRRRSTIRSWVVKDTPEFEFITATPTPPQPKPKSRRKRPRSPGIPLDEQLHIARLSPVARRFRARTNPSSVSFTANQELTNIAGNLYNKGVTVSELARASGVTYRAMKRRVDKALAQ
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