| Basic Information | |
|---|---|
| Taxon OID | 3300027782 Open in IMG/M |
| Scaffold ID | Ga0209500_10000846 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24701 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (51.22%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005740 | Metagenome / Metatranscriptome | 391 | N |
| F007361 | Metagenome / Metatranscriptome | 352 | N |
| F012111 | Metagenome | 283 | N |
| F021287 | Metagenome / Metatranscriptome | 219 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209500_1000084637 | F007361 | GGA | MSVLFSLENDCLGIHEQGATDPNWKQSIEDYRLIHKYVADCSTYGYLPKAVVNDSIKVYVKKDAESSSKECSERFGYEVHLQSFESIREYADQWACSNDVMVIEEGELFKLDTLRRIWVHCFKDERPFPEEKATRLLTMNIQRHEPEKVFSVENGNRFVKEVF |
| Ga0209500_1000084639 | F005740 | GAG | MKLIVQDIQSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTLSGSVWIDGEKLTLALPYVQSTKKFTSLTGVIREATNTASRLYEYNATTLLELDVAVYDPDETLPQYRRSYLADRCSSDDSKPVTVMAKMRHVNATGVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF |
| Ga0209500_1000084640 | F021287 | GGA | MANLTLINLVPPSLPVNYCPTNYQTLANDIISGTQAIFNSTIGNSFFNFGASFPAINNRVYPWLDDQGLWWIFTQGFWIRKNTVEAAGQERRMFVGSTIDLGLYDGGDGAVTVTSVTGPMWEIDAAFAARFPVGVGAFAASGAVAVNGTATATSVVGEDKHVLSDSEIPTHNHNVRVETANGTPVLNLRTSPKNLLATEMMTFHLNLVSMW |
| Ga0209500_1000084641 | F012111 | N/A | MSERAPKRYTDGSVTFEGGVDSGVMPSEVDKNQVAFAVNASFRQGFVSPRPGFIQKDMVICDAITADNATITADITNITADGYSEECYNPSGLTGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSGPLIFDGVAIRRANIDEIKCGRMMAYVNGRIWYALENGFSFRATDIVYGDGTRASVLKETENTFLNSGGDFAVPSDSGGITAMCIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDIWKNLNYPIQAISLLTNGALGSRSAITINGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFVLARGSDQSIQFWEISKAEKEDNSVANGPSSIEWLVQTRAYNFEIPFGLKRLDSGDIFIDALDGTAAFNVQYRPDQYPGWLDWANWSECATTNQCSNLCPIANFQPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTITGFCRIKSVRVHAYDVQESVVGECRTSQGCKTLEACDVNPFTYTSE |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |