NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10000695

Scaffold Ga0209500_10000695


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10000695 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27872
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (70.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004431Metagenome / Metatranscriptome438Y
F006385Metagenome / Metatranscriptome374Y
F013527Metagenome / Metatranscriptome270Y
F020171Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000069540F020171AGGAGMEQFIDTLAEHITGAIQQEIAEELFDQWSYNNLEEGEDYAENKFMQYASDELKQQYNEYYGYIEGDDFLL
Ga0209500_1000069553F006385GGAGMILDNGTLIAIVIALAGSLSMMIAFWQRNVKLEKEIRRLQITLRTERLLK
Ga0209500_1000069562F013527AGGMAVFEFNAFINVEAESYDEAIDVFQFQLKYGINKDNVYVADIKDLEIA
Ga0209500_1000069568F004431AGAAGMTITYSLWDGAQLLGAGFTATSADEMNKVVADLQKVSKNVVAHMRKVEQN
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