| Basic Information | |
|---|---|
| Taxon OID | 3300027782 Open in IMG/M |
| Scaffold ID | Ga0209500_10000395 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37985 |
| Total Scaffold Genes | 61 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (78.69%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000340 | Metagenome / Metatranscriptome | 1267 | Y |
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| F012668 | Metagenome / Metatranscriptome | 278 | Y |
| F067746 | Metagenome / Metatranscriptome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209500_1000039532 | F000340 | N/A | MNIHDILKAVLPIVVACLAWLLGQVSDFSTRLTKIEGQMPALITKENVPTDSPLSAEARHKLRNEIYTDIHQLQVKVQLLEEREKYGKK |
| Ga0209500_1000039534 | F067746 | GGAG | MDEIEARLNSHEAVCAFRYETINARLKRLEKIMIGSAGFIMASLIAVVLKL |
| Ga0209500_1000039545 | F002085 | GAGG | MNVITPVDNTNNIRIADFVRLTTPTETFRFATTASVLTVAAVDAQPFEAVGQLIKIGDATKDIKSTANETTVTLVGIDTAMLGLVLGQNIKGSQIEMWHGFFDTDGALITAGGSGGLYQFFNGYINNMSISEQWMEELRMFVGTVTVSASSIQLILQNRTAGRYTNNNSWTFFNPTDTSMDRVSFITTINYQFGKTA |
| Ga0209500_1000039546 | F000934 | GAG | MSLNQILAISESVQVNDHRFVGQMLSRNQRISTSEILTVVPFSFDLKPMNYLLYSKNRALLNSLRIPDMALQQYLNFGTTGWSNYIAYQGSMNSGQISACQWQSSSANKNLVLGSLPSIDAGAYIVKAGDFCQVGLYSYIATADVVRGAGSTVNIPVHRNLITTISSTVNAVIGEYGTTVSMGGSTYTGTTFQVILRAYPTYTLMPMKDDSFISWSGSFTAFEAVL |
| Ga0209500_1000039554 | F012668 | N/A | MGIARFENLDINNVTNSIDDVGQQTTSTTKWFSTRARVGDVNNSLRISDRYRVYSDLVNFTFNYTPNLKQIVDDQNLYSITWRDRDWRITDIRESNDRMTVMMLCYRNDPTIPV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |