NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10000210

Scaffold Ga0209500_10000210


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10000210 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53058
Total Scaffold Genes103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (14.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027848Metagenome193Y
F082703Metagenome / Metatranscriptome113Y
F094901Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000021034F082703N/AMKSFKQFSPKVDTNRRLVLTRIYTGVNGSNSFCYQINRINKKGEVDKKFKTLYSFGTDDISSIGNFHKSSTGELIKVAKSPFKSVFGVEQKSNPVSVWNRKISI
Ga0209500_1000021058F027848N/AMIIFNTIKKAEHYVKWCQKNHDYSNNGYDWSEQKTFIEEDLVKVRSAGDGCGCGCDNYLYNYTTIIGRIKKFDAKSIRGGKLKDLGIK
Ga0209500_1000021087F094901N/AMKKLLLGALLLLSTTKIFSQNVTNFGLYIINPTNCPYSITGYWVDSIGTSGSLFFTVGDTSSVFQDVWYGQAASISATSTMSICVVPAPPCNCPPACIQQIPVTQGSYTILLCDSIVGIEEQPISSLLDNKYYDLLGREIKDISTYSINSFYIKNGRKYIKIGQ
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