Basic Information | |
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Taxon OID | 3300027782 Open in IMG/M |
Scaffold ID | Ga0209500_10000079 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 89999 |
Total Scaffold Genes | 146 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 84 (57.53%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005300 | Metagenome / Metatranscriptome | 405 | Y |
F013393 | Metagenome / Metatranscriptome | 271 | Y |
F017796 | Metagenome / Metatranscriptome | 238 | Y |
F061650 | Metagenome | 131 | Y |
F075664 | Metagenome | 118 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209500_10000079110 | F061650 | N/A | MTISNYRAVEPLFIVFLRNSNQAEQLFRAWIKQNRIEHANVSSNRMMLHDQRAFEQFRVTWTHGLESVTVWDTWLKRHIYFD |
Ga0209500_1000007927 | F075664 | GGAG | MNFRSWCREKWYEHMDELISYGLKPQLTAQEYFNRYKFWLKREYRHQQGVK |
Ga0209500_1000007932 | F005300 | N/A | MNKRVGPITLDSEAADRITMLTLKEQRAYLKKELTEWKKDPRTDTNPGGKWMHPEDVEINTRMIEALNTVIKYFGE |
Ga0209500_100000795 | F017796 | N/A | MSQEQKLDAWAERELKRNIDSIIIDDGTGSLVVFGRYRIQPQGTRFQVSTWDKTIHSFSTKKTAMSWCTTDHQQQYNLSNQILVLDRKKQSLAADIYCRQIAGERGKTESFYEIINMKLQPKIDQYNSVTAELEKCVNQAKYMQIKGFNNETARTIGSNAK |
Ga0209500_1000007971 | F013393 | AGGAG | MRHVAGFSNSTKIRFIVNGFGMYGTINDIYTKTATVTHGAALRLAIQKLAYDRRRSPFTGEGRPVGVNITHEGHDVQITLMAN |
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