NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10000079

Scaffold Ga0209500_10000079


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10000079 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)89999
Total Scaffold Genes146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (57.53%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005300Metagenome / Metatranscriptome405Y
F013393Metagenome / Metatranscriptome271Y
F017796Metagenome / Metatranscriptome238Y
F061650Metagenome131Y
F075664Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_10000079110F061650N/AMTISNYRAVEPLFIVFLRNSNQAEQLFRAWIKQNRIEHANVSSNRMMLHDQRAFEQFRVTWTHGLESVTVWDTWLKRHIYFD
Ga0209500_1000007927F075664GGAGMNFRSWCREKWYEHMDELISYGLKPQLTAQEYFNRYKFWLKREYRHQQGVK
Ga0209500_1000007932F005300N/AMNKRVGPITLDSEAADRITMLTLKEQRAYLKKELTEWKKDPRTDTNPGGKWMHPEDVEINTRMIEALNTVIKYFGE
Ga0209500_100000795F017796N/AMSQEQKLDAWAERELKRNIDSIIIDDGTGSLVVFGRYRIQPQGTRFQVSTWDKTIHSFSTKKTAMSWCTTDHQQQYNLSNQILVLDRKKQSLAADIYCRQIAGERGKTESFYEIINMKLQPKIDQYNSVTAELEKCVNQAKYMQIKGFNNETARTIGSNAK
Ga0209500_1000007971F013393AGGAGMRHVAGFSNSTKIRFIVNGFGMYGTINDIYTKTATVTHGAALRLAIQKLAYDRRRSPFTGEGRPVGVNITHEGHDVQITLMAN

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