NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10068525

Scaffold Ga0209709_10068525


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10068525 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1966
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016619Metagenome / Metatranscriptome246Y
F056357Metagenome / Metatranscriptome137Y
F101840Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100685251F056357N/AVEVPFDSHGQTCSFDEIAVEFHCVWQGFKEVYTLEDMKVYQGLLSEQRYDQEIQKINEAALEAIAVEQAKLTPNEKTIQNIENKLDRGTATARDSVLMNLLKELNTCKQGMDSRTQNIQTAREFEISDFQLWSVNNVKYDGVLGEIAMAIEECEAQDEVYKLSIGYENFEHTKQFSLADKFTPDIQAIPYSQWTETNSGINKSLICDSNAHSQQYKIQFGCLILYDGLDAESIKAQNELRFGTDGVMNYQSQVLDDYNEFLGTYGNIHATIEDKKVEEAIAEPIANEWKDDHNFYQNSLE
Ga0209709_100685252F016619N/AMAITIIQNANHKSLTGKTLSIQSELTSKLKSVVVDITYAAGDNYLTNGNVVDVSLGSRISTVIGAEILDGNKGLLLQYIPSATNAASTGKIKCYGEDHTAKGAAARAFAELANASTAVNSMTCKIRVLGF
Ga0209709_100685254F101840N/AMVTYCTVADVSDFLRVPITATTTPNKAQVEKIILRKEEEMDRRIGHHFGGLIASNEEI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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