NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10056303

Scaffold Ga0209709_10056303


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10056303 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2239
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017220Metagenome242Y
F020442Metagenome224Y
F031262Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100563032F031262GGAMKLEIGKTVSIMNDYMEVVTGELSAVDSDSYDDVKLDNGEVTYWSKKKKMYVPVREKHKNSIFFEIKTPLGLEYASEKELF
Ga0209709_100563034F017220AGGAGMNDARLISISEKLNKYVAMIRTQNPNMSEKDIVDRAATLAVTEQKNFEAKAGIVPTDAVADRFGDGTRIDTAEDGTSIVRVSNAWQQGKGSKISSEGFHKKDHSTITMPKDIDITTPEGDKRAGKFIEEVKAAKKRGAKLQAEADHDAWENRKVQVTVDKKEDAHAGQKD
Ga0209709_100563035F020442AGGMNNVKKSAIEKLAKMGLTEEEVLSLFDEDEAEETTIVAEDGEPASDSSGGSKSWQQLVMEEHVGYYNIRYDTNLTFDEYYEGVTNGELEVHYNWKQLLGLEEQAPVPVSENVNEEKFKKHGNRS
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