NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209709_10039769

Scaffold Ga0209709_10039769


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10039769 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2819
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005720Metagenome / Metatranscriptome392Y
F051469Metagenome144Y
F070572Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100397692F070572AGGAMATKNNFTLNQNYELTGHEVTILAVDFIYTMAAEVNDASDGTALGGLELVRNTFAQQGLTVLSEGPLTNSNTEKNYMVRKDSLDTLSSTTSIAALQAALRLLDQSSSSYPNITADITGATVTEKELIVAV
Ga0209709_100397693F005720AGGAGMATSNATTNMCRRQAFTGKGITFIEMMFDDEMVTTSTTPDTKDSVFNAMSKLVGTFGTIIAQSYALGCKATEKDAALGTSILEDELCDYYTFAVEGTPGQFNAADSTGDYNADPDQANASDPGVIADAEADIEVEILARIAENDSAGGVHVDVRYLPADGVTSAGAEVVYGFNSARVNA
Ga0209709_100397694F051469AGGAGMIEKFTVEIEVGDRVEMGRMHLANQTVKAIEIDKWGHPVMVLSSGRKRGLFNMRLKKLIPEDIKRVQEPSDVMMTKEQWAEAQAKIDKARAK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.