NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10032343

Scaffold Ga0209709_10032343


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10032343 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3231
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y
F056893Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_100323433F005848GAGGMAIPVQRTYLATPVALNAPVFAVDQQSLQNNFLTLTPNTLQDLVNNPDPAAGLLYTYTLFKNGNSTAIRAFSAASSAQTSGRVPVGIVSMSSGSYQWSVTQNAGAVTPVTILVRYGSQLN
Ga0209709_100323434F004537AGGAGMPFSNNIVNNFQLNSGNTPLLYPIRITAPAAPLGTNFGISFPDQFLGRAISLKITNLDGANGCFYDYNLNGQFKPLGASSFDTIDNTIVNYLTIQSGVAAGVLVEAQILPALRSEVPTEVMV
Ga0209709_100323439F056893AGGAMTQQFKKTKEIKVHKTLTMSVSFWALVEQVRSKQHMDTADEAIMASVLSLARKIGIEA
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