NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10006677

Scaffold Ga0209709_10006677


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10006677 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8830
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008590Metagenome331Y
F012507Metagenome280Y
F014672Metagenome261Y
F016324Metagenome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000667712F008590GAGGMKTGDLVTYWYQRPRWRKGQSVHVGLVVETGKFTGNRDVKVLWKGQPEPETECSQHLSLVDDSLTT
Ga0209709_1000667715F014672N/AMFTNEREQALLVEKFKTGDLVKIRDGTHATEIPDHRVGMIIERGDASGNYTESYTVIFLGTDIHLKFHEMFLEHFTSS
Ga0209709_1000667718F012507N/AMWTDKLKIGDLVWSRRDDKPALILDTEETARAKYGDLVNKRMRFKLHVDGQQGWLDEVKLRVMYKLP
Ga0209709_1000667719F016324N/AMIGDIVRLSGPGGMGRQYKRVHGVGIVTSTHKPEDRRIEYEVKWLKSDERMRFNEEDLIIISDVDRQT
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