| Basic Information | |
|---|---|
| Taxon OID | 3300027779 Open in IMG/M |
| Scaffold ID | Ga0209709_10006108 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9312 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (42.11%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004843 | Metagenome | 421 | Y |
| F006146 | Metagenome / Metatranscriptome | 380 | Y |
| F010943 | Metagenome | 297 | Y |
| F012279 | Metagenome / Metatranscriptome | 282 | Y |
| F097510 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209709_1000610810 | F012279 | GAG | MNTERDKLEKANLIENGLSVLKDTMKTLETVETTLDSLRETKWDLVSELKKLGHDFTATTEGMDVVLSAPPSMRF |
| Ga0209709_1000610817 | F010943 | GAG | MTSEELHEYLLKLKLTSEKTLAEYKKTIRQELESYRSDQPCPPIDSILPYPTEKKDIVFYSFMEAENKPKIGEHEYKRLKISWSSLRKHNQDIEIRFCYYGDLSYTRFKLEREQEKWQSLCDDWGVEMYPFHESFTGNEPNAWSIHRWYNLALWKDENLNILYLDADTYINGDIQLIFDNYKRDPVYGREEIGFRHDPNQGIRGEDPRYYLDLIDASIVAQGGKTEVNKYCLGVILLNHSVHKLFTPEVLSDYTDLLERIYTHLVFYPIPNFRIMDQFALWVLLSRWSLRTSLFGDQDVTQSFLEKKHETIFNPLVLHYTTKDEEKFAAWKPEFSQLSRSQEEREDSVI |
| Ga0209709_100061083 | F006146 | N/A | MIIPTATLLMVNALIFSWIAFTSPESCPRKYRVTTENGGLLVNAADVHRYCDIDYGGKFVLKDEYTDEQGDG |
| Ga0209709_100061086 | F004843 | AGGA | MIIRIIAISLLMMILTGCARDATAEDSTEVTPAQQSLERTTLAETTVQWVAIVMTWNPVIYTIDKEFTSEADCWNYYNTGTGEGDMRSRYGTQVLDHQGNKPDKDYMKKHRPAHRVYPTRMYKGADGWSKGLIWLTCDTK |
| Ga0209709_100061088 | F097510 | AGGAG | MFNPIRVVWELIEFGIQALFVYVLVIIIFIGIIATILYKEKNKEQDWNKAIKKAKIDYIQECTRVDGCRIRKDGTIEW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |