NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10004985

Scaffold Ga0209709_10004985


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10004985 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10573
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023875Metagenome208N
F029898Metagenome187N
F033643Metagenome / Metatranscriptome177Y
F048555Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000498510F023875N/AMFLYGVFAIILCLYDITYTHSLFWITMLFLSLIQFFAYANGLKAQLENQFIKDFNETIKKTLEEQQQKEYNQFRNN
Ga0209709_1000498511F048555N/AMKSVTITIGDYDLEIIEQIFEKESAFSPQDPRDELMIEVMRQVKDNPKVNLGADEEEEYKKAKTRFSKNLGADGKQVVSRDGQYLSPEEVGLSN
Ga0209709_1000498523F029898AGAAGMKKSPVRTQELTYKREYDGEVKNYFVNIFEDWDSHYIGYTYDTHGANCGVKRFNKDSIQKMKAAKRNFALINV
Ga0209709_1000498524F033643N/AMRNETIVDEKPMFSASEIYPGFSMTLANGWEISVQWGRNHYCANQDNPNKESRRSTTAEVAIFAPDKDGSGRNWWSYDEDLNEVVEQPAETYVNGHLTTDQVANIISIISKKST
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