NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209709_10002244

Scaffold Ga0209709_10002244


Overview

Basic Information
Taxon OID3300027779 Open in IMG/M
Scaffold IDGa0209709_10002244 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17066
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006643Metagenome / Metatranscriptome368Y
F007946Metagenome / Metatranscriptome342Y
F008525Metagenome / Metatranscriptome332Y
F029246Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0209709_1000224410F006643GGAGMAEDRLRDIELRLERMHNALTRQEEELSSWRERSSRLPNWIRNGGLALFFALFAQSMTAVWWASEITNTQANMLADVKVNTEYRIASTERYNDIMIEIVKIQVMMDNHFNKDSRERYNDQ
Ga0209709_1000224423F007946GAGMTTRNLIDNIKTGDAQTSNNTFNSIMHDKLINALDNHKQEVASKMYGASDDAPAVEEPAAETEVEVTGEQEADADV
Ga0209709_1000224424F008525AGGAGMLTFKESFNEVVEAKLNLPKGEKVTKELTKLGKKKNVTAVITSKFNLYIDGVKLDKYKDQASAEKAVKEFIKLMGA
Ga0209709_100022448F029246AGGAGMGSNLGLIGFGLVAIFATGIVKIVAFAAIGWGAWKAYKDWEAQ

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