Basic Information | |
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Taxon OID | 3300027779 Open in IMG/M |
Scaffold ID | Ga0209709_10002244 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17066 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (92.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006643 | Metagenome / Metatranscriptome | 368 | Y |
F007946 | Metagenome / Metatranscriptome | 342 | Y |
F008525 | Metagenome / Metatranscriptome | 332 | Y |
F029246 | Metagenome / Metatranscriptome | 189 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209709_1000224410 | F006643 | GGAG | MAEDRLRDIELRLERMHNALTRQEEELSSWRERSSRLPNWIRNGGLALFFALFAQSMTAVWWASEITNTQANMLADVKVNTEYRIASTERYNDIMIEIVKIQVMMDNHFNKDSRERYNDQ |
Ga0209709_1000224423 | F007946 | GAG | MTTRNLIDNIKTGDAQTSNNTFNSIMHDKLINALDNHKQEVASKMYGASDDAPAVEEPAAETEVEVTGEQEADADV |
Ga0209709_1000224424 | F008525 | AGGAG | MLTFKESFNEVVEAKLNLPKGEKVTKELTKLGKKKNVTAVITSKFNLYIDGVKLDKYKDQASAEKAVKEFIKLMGA |
Ga0209709_100022448 | F029246 | AGGAG | MGSNLGLIGFGLVAIFATGIVKIVAFAAIGWGAWKAYKDWEAQ |
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