| Basic Information | |
|---|---|
| Taxon OID | 3300027779 Open in IMG/M |
| Scaffold ID | Ga0209709_10000621 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33563 |
| Total Scaffold Genes | 67 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (80.60%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004771 | Metagenome | 424 | Y |
| F005547 | Metagenome | 397 | Y |
| F010950 | Metagenome | 297 | Y |
| F030886 | Metagenome | 184 | Y |
| F053548 | Metagenome | 141 | Y |
| F053549 | Metagenome | 141 | Y |
| F079212 | Metagenome | 116 | Y |
| F101902 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209709_1000062146 | F030886 | AGG | MSYHGRPPDYMKTGIGVVNPLIRIEGKLKRVQEVLDNISDSSILTANDLKTKIEKVLKE |
| Ga0209709_1000062150 | F079212 | AGGA | MNPDEEKLIDRCIESYHNMIKHHRRQIIELSRRKIKDERCMECFDFEVINESGRSSKSEE |
| Ga0209709_1000062153 | F053549 | GGAGG | VKVGDLVRWENVIYDSMDHHREEHGIVVQMSRTGHDTESAQVLFNDGETWWLDSEKLVVVSEAGR |
| Ga0209709_1000062156 | F053548 | N/A | MKNSDDPGIGDLVVAFYDEERDISCVGLVTETKGIECKVQWSSENNPVGWWQYSKLKVVSTA |
| Ga0209709_1000062158 | F005547 | AGGTGG | MRVWVMQGSYEGEMFSSVHFTQKGCALACISDIIEFHGIDDDETAMQVVENSYEDATNPIPIEWDQEKLKEMTSKQLWKIFSDWCEISWDRMSDRNYNLDSHQMEIQA |
| Ga0209709_1000062159 | F010950 | GGAG | MNIWVVRNTCLYSNETYLSTHITEKGALVAAIKVVRGDLVDGFDEDELEDMRPGMPRDPEEDLIQYSSEQLRDIVQDWWEYGHEMNEHGQYEIHQTQVTG |
| Ga0209709_1000062160 | F101902 | AGG | MRVGSLVKRRDDHIHHGIVMEIGPPATATDHGKTVVKIQWNDGDLTCEFIKLLEVISESR |
| Ga0209709_1000062165 | F004771 | GAGG | MRRIKKGDLVRMHTHDTGLVGIVVDMHPHANHPRDCQVGIKWFKGSGKVDWEPESWLEVVSESR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |