| Basic Information | |
|---|---|
| Taxon OID | 3300027773 Open in IMG/M |
| Scaffold ID | Ga0209810_1000562 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 78150 |
| Total Scaffold Genes | 95 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 60 (63.16%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001212 | Metagenome / Metatranscriptome | 746 | Y |
| F003972 | Metagenome / Metatranscriptome | 459 | Y |
| F008466 | Metagenome / Metatranscriptome | 333 | Y |
| F009695 | Metagenome / Metatranscriptome | 314 | Y |
| F019531 | Metagenome / Metatranscriptome | 229 | Y |
| F071559 | Metagenome / Metatranscriptome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209810_100056212 | F008466 | AGGA | VQEDLIEIDLDGKIVPVPRDVVGALAAAAAARAGVSGQHRDLSLQLNRGLERGRATLGRAQIRALCAVLEEEHPDRFGPAGTELRRAAP |
| Ga0209810_100056231 | F019531 | N/A | MSLDITPEPDEAERQAIVEALAAEQAEHATASAWADALLPSREEGEP |
| Ga0209810_100056232 | F001212 | GAG | MWEECIRCNEAPAVDDQGYCGHCHWAVRAEVEEGFYALREYLRAWARFDEWCEDRGIAA |
| Ga0209810_100056249 | F003972 | AGGA | MHLDPHVAIAAVSTLAAAWLMITAGLQKSALERRRRRRVCPSCGREIQARVCTSCAG |
| Ga0209810_100056284 | F071559 | AGGAG | MIDVRFLRSGITRRLPAFWIAALLVLGCCGTSLAAASAHHRHPGRSKLAGTWTGSYSGAVSGHFTLHWKQTGSRLHGSITLSRPSGTYGISGSVHRGKIKFGAVSVGATYKGHVRGTSMSGTWTSPQGGGTWSAGKQRK |
| Ga0209810_100056292 | F009695 | GGGGG | MKPLRWLFVLAALLATALLLVATSASADNGNASPTLSFFSGGDGANAHWVNTADQPPGDTDNQAIQLQTTNDALTFSKGYAGILVHHVTGIPAAAFPDSEFWVKATNYSGASLGSPRLVVEFQDTAGNFVGDGQLRPLTLTSTRQDVNDQAAYPNSGWDVSGGTCGFLYNVKWQDVQSCFAGDTVLSVFIVADAYGINHLIDDITVDGKRFSNASDNGGGNNTQAGPAATTDPSLLPPNLLALL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |