NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209810_1000285

Scaffold Ga0209810_1000285


Overview

Basic Information
Taxon OID3300027773 Open in IMG/M
Scaffold IDGa0209810_1000285 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)130741
Total Scaffold Genes167 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)106 (63.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014499Metagenome / Metatranscriptome262Y
F020523Metagenome / Metatranscriptome223Y
F068054Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209810_1000285123F068054N/AMREYVYDVPDKEPVEGQELHLSDGSGPWRVRLREEVPGQPRSPYNVLVVERVE
Ga0209810_100028549F014499GAGGMYDPGLDRHEWESEWEALADDLRSEPAQALPELDGLVAGMLEERGYDLTDPVVRDGDEREVVAEYLAAHEIAEAAERDAGDLSPGDVAAAINGYRAVFDHLVTTRATADAPLDAGEADDA
Ga0209810_100028597F020523GAGMDGRDEKQDVSEQDVLHEVNAHVHEAARRFEGTGPALELWEFTCECGAPGCRIPVSLTLAAYEALRAAGRPVLAPGHTTGSAS
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