NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209810_1000196

Scaffold Ga0209810_1000196


Overview

Basic Information
Taxon OID3300027773 Open in IMG/M
Scaffold IDGa0209810_1000196 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)173479
Total Scaffold Genes194 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)133 (68.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010964Metagenome / Metatranscriptome297Y
F015568Metagenome / Metatranscriptome253Y
F039787Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0209810_100019626F015568AGGAGMTKNPLDRLATLGEEVLGKASQNPNLSRVMQGAMQLKDRVDDLSKRVRGLEGMEKRITDLERRLAKLERGGSTKRPSSGSKSKSATKKSS
Ga0209810_100019652F039787GGAMTELLERIETMISTETRDLDQIERTLTDGYAEALSLEAEKWRLERRIAEVTQGIQRGDTAQKARELATLTRRLDGNEGRLTKLRALLVDLRRHATGVRVGSPVR
Ga0209810_100019656F010964GAGVKTCRHCGNGVEDRFRYCPWCAAPQRRKLVQFFAPHPAVERDAQKALRVSRYFGDEATPPQVRFSIWNVDAAEAAVSLSPEEAQRVASFLAPPPRRQRLRDLRPTLRL
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