| Basic Information | |
|---|---|
| Taxon OID | 3300027772 Open in IMG/M |
| Scaffold ID | Ga0209768_10022544 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3509 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (54.55%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000714 | Metagenome / Metatranscriptome | 924 | Y |
| F013892 | Metagenome / Metatranscriptome | 267 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209768_100225441 | F013892 | AGGCGG | MGDRANFGFVQPNGHTIVLYGHWAGHNMLANLAEAVFKARPRWNDASYATRIAISQMVADDWNSETGWGLSVNLINDNEHKIAIVDFKQQTFSLHEEAPHN |
| Ga0209768_100225445 | F000714 | N/A | MKEDKMEDTPYGATVTPVVPESYNANLLVTYKVIHGYSDAEYATDKVASIEWSLHNGRQAQKQSNMYVSKIDTVKDIITEAYADSDDQETLRAIAEALDIELTRTVEWTASIEVSGTIELDLLAGYDTDIESEITDAIYAESQNGNIEITDQEVCNVSEC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |