NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10083953

Scaffold Ga0209086_10083953


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10083953 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1671
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F036603Metagenome169N
F042864Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_100839531F042864N/AMKPTTKPKATLVSDKAMVELLTRRVANFRETAKLKDNEGHIRGIGSYALYGIKHSVSQLVVLASEPTSSDFNEYVTAKAKADVCARYDHVVEYRDVGPASKPKVTILC
Ga0209086_100839534F036603N/AMAAFSVAIITDHILSSFANSNTMALLITDAGTKSDDLGLERQLTSATMGLKACRDLGWALAVGCLGVGIAVFLRFRRANAS
Ga0209086_100839535F001923N/AMSPPPPIDNDATQSLVKDGLVASILGGLAATARLLLSTEPVTIGWVIRRVSAAAITACLVGYALQDHIQSPGLRMAVVGACGYSCPELLDYLTKYVKARGEAEVAKVTKKPNDKKKPSKRAK
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