NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10030757

Scaffold Ga0209086_10030757


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10030757 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3213
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001182Metagenome755Y
F015839Metagenome / Metatranscriptome251Y
F102812Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_100307571F102812N/AISGIMANPATQRKTVDEAMGYVNSLLAKRVNPETGTIDPMALYSVRKDITDAMAGKLAGDQANLRLAKGQMAELLPVIDNAIEAGAPGFKNYMEKYGKSSSAIDQMRLLQGIEAKVTTGQPNLMTGEPVLAASALRRQVAAKADEIGAQLSPAAQTRLDNIINEINRGQAATAPGVKAPGSNTFQNMSMGNLIGRVFSESMADNTTLRTMTRPLDFLYKLPDQQIQQLLVEAMLDPKLAATMMGKANIMKVEPMAQSLRKKAQELGFGAAIGAQE
Ga0209086_100307573F001182N/AMVVNMNYGPTPSCPNGLYQFECAVEDVDLICFLEYSPEEKGYTDSYGAPYEPDIEECMTLNNAYIAGTDVDIAHMILQSMVDHIEVTALEKFLDK
Ga0209086_100307574F015839N/AMKNTTFTASVASDLFNAGFACDGHPFIAEQFYVVIENAAGKRFRHQAIFNGTQQVICEETGDAHFPDLRAEASAKADRLAARVNAALDAGKFISPTFWDEIDPAYGSDEYADQGTEAKRLFAEKAAA
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