Scaffold Ga0209086

Basic Information
Taxon OID	3300027770 Open in IMG/M
Scaffold ID	Ga0209086_10023856 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027770 Open in IMG/M

Scaffold ID

Ga0209086_10023856 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3777
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3777

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001338	Metagenome / Metatranscriptome	719	Y
F002038	Metagenome / Metatranscriptome	600	Y
F002413	Metagenome / Metatranscriptome	561	Y
F004790	Metagenome / Metatranscriptome	423	Y
F006659	Metagenome / Metatranscriptome	367	Y
F074555	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100238561	F004790	N/A	METLTLETLAWARKVGLPPDRVAFLLACPKYTVSKGHRKSDRVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGHDLLTARKRRDEMLAAFDSGKAIPHINTR
Ga0209086_100238562	F002413	N/A	MTDEAPLPMSAPTLVLISGFARAGKDTLATGLLEWSTRAAEHINYADALKEAGNHFMDYLGLDGNFLNEDFKVENRDALVHMGRFARRLDKDVFARHLANWCPVMKHPDSVSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTTGVGPANDEELDSIAEIRASHSFDQEYIFKPNARQQIMNEGRLLAKSWRL
Ga0209086_100238563	F001338	N/A	MTTENNDRPALTSISTNGTYKLKLIKPKFEKVKVWEDGTCSARLFFVDHNGFCLSKNFSTKYGKALAMLVGKYSGKFTKEIRLDATAAEYLQYIDGACGQTILVGVECEPNGEYNGKPQFKYKMTYPKGSQKPVVKDALPDNPPF
Ga0209086_100238566	F002038	AGTAG	MPDLPVGIERIAKTVAGQYALLLLLDGYPYVEMTARKHADYLSDLGMWKRKTHPSLARSQVRFFTLAPSGEIKELTFNR
Ga0209086_100238567	F074555	N/A	MSQPDPFAFFNDAVKAANAQNELLAAQARIKQLEERLEAIREAGDAIWYCVRHATEVAPQEIVEAIEDWQVARNNA
Ga0209086_100238569	F006659	N/A	PYLMKKDIKSPSEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKSTDAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209086_10023856

Overview

Ecosystem & Geography

Associated Families

Sequences