Scaffold Ga0209086_10009315

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209086_10009315

Scaffold Ga0209086_10009315

Overview

Basic Information
Taxon OID	3300027770 Open in IMG/M
Scaffold ID	Ga0209086_10009315 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6736
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	7
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047005	Metagenome	150	N
F085607	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100093152	F047005	GGTGG	MASRTIRQLREDVTTRLLTLTGWKESRVAPDNFGRDADSLAHKCFSVAPTETTDLRQYRGRPAEGTLVETALEVRYSWRLAPKSMSDTYDDALDGEQALVNKLMAYDVTWPLSYKFQLITTTRTTNDAGEWVTGVISFRVVHTLPLQ
Ga0209086_100093155	F085607	AGGAG	MAATFGTSGTGNFAAQPASRPQAMKELVRLEPRPAWWYIHHPARWTFREGEWVPWLSVLAADPGVSNVDKDGSTDAAEVAKRRRGWTVIPWEAEAGGYCVAYEGVAGLVHLSKWESPKIVAGQTRIQSDEEGYWAFCRSLVGTYIDLPDPDFIGVQIERQEKKVDEWREKAPSSPFHRDALAVEEALLESMISAKERLYNPPAPGEEPESAPKPKVRRGRA

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