| Basic Information | |
|---|---|
| Taxon OID | 3300027770 Open in IMG/M |
| Scaffold ID | Ga0209086_10009267 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6759 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046192 | Metagenome | 151 | Y |
| F048091 | Metagenome | 148 | Y |
| F067515 | Metagenome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209086_1000926710 | F048091 | GAGG | MIEHHFIIKYSKEGGWEWDTDSEELRYSDGTVWNEQTQEWQSGYIGWNEEKGEAEYLDDDDFIGEQLTAILEIANGLKAII |
| Ga0209086_100092674 | F067515 | AGGAG | MSYFTNETLKSKAQEIKQEFENGGASWEGVALEIARLQLKLEAVKEGLGVDFRIDLGTWDGSYCASEEDITLFNPKCCEHDFNSACACCMAECDNCLEA |
| Ga0209086_100092675 | F046192 | AGAAGG | MAKVMKSHTLLADDSGAVWVEAQLSEAQTKRIIKGYEKAGVSLTAYGSPNQMIKQVEEINAFFANDERSRSFVEAGKFQVIGVGF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |