| Basic Information | |
|---|---|
| Taxon OID | 3300027770 Open in IMG/M |
| Scaffold ID | Ga0209086_10008443 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7118 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Lirvirus → Synechococcus virus SCBP3 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002843 | Metagenome / Metatranscriptome | 526 | Y |
| F005024 | Metagenome / Metatranscriptome | 414 | Y |
| F006107 | Metagenome / Metatranscriptome | 381 | N |
| F009398 | Metagenome / Metatranscriptome | 318 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209086_1000844311 | F002843 | N/A | MIVPVNIVAVQCNQNNSLFVTTGVDYDNSGSIVGSEITSQYTLNPGDDLTGQPTEVVNIANALWTPAIVEAYKASQPKPE |
| Ga0209086_100084435 | F006107 | GGA | MNAVALRAELAVADYLAAANWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDTGASALNAPSNDASGPFTAQFAAPLDFGGSSISNRSRTFTRTFTLYCSATI |
| Ga0209086_100084436 | F005024 | GAG | MTVDSSKFDAAMKQYLLSTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSPKWKPLSKPPGYKAPKQTNAALVSLANQYGLPQENVATHKGTKARGIQAVPGFNPTASVVMTAGVADSQYNRVAGIYNTAMQKAFDDETTEMVNHMTEALLANGKVLEDNGISIK |
| Ga0209086_100084437 | F009398 | N/A | MTIIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGLFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYTLELGAKTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |