NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10003995

Scaffold Ga0209086_10003995


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10003995 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11030
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002826Metagenome / Metatranscriptome527Y
F003304Metagenome494N
F003962Metagenome / Metatranscriptome459Y
F011649Metagenome288Y
F019450Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_1000399512F002826N/AMLVETKARLKWSRDILLTAREKLVLEKNRADRGRSVDIIQIITMVDAAALIAKEILEEIK
Ga0209086_1000399516F003962N/AVAYDEGQEGHVLSQDRDELKMAHKFISLLQLENAKLHGVVRLLGGLVDDMEANCSYEVFEAQWEGLTTYVKGLSEFFSTHQKALQSLQEACPAVWDQDEVDET
Ga0209086_1000399523F019450AGGAGGMESTKHSFAVYNSRGQFFARFTSYARALRWAVRNGMEWSAEIKKERDTQTK
Ga0209086_1000399527F011649AGGMEESLVEKGKNGRDIFTKELADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDVQLAGEKSWQAKAWILERGYNWAQPSARLAVTQDVTHGISSNLASLLAGIAVKKKAQVIDLQDVKAKPKLNSLYNSNCATSGTQDAVTTTQLKICKPRKVAMRRRKPRQESLAKYTTTPPATPPAPA
Ga0209086_100039953F003304AGGAMRKALVTQAFGDEWKKILELTKPRMEAYCKRHKIDFIALEKPLVDPVQYTKSAIGNIMATKGYDQVTFLDADVLVATDCPDIGEDAGVFCAFDEGAFLDRKLAMGKLAGAFGAIIDPRFYVNTGVFVISSKAVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVEEHFGLDRYTDAMCIHYAGQSVDLVKLAELIKADDAKLVELGR

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