Basic Information | |
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Taxon OID | 3300027770 Open in IMG/M |
Scaffold ID | Ga0209086_10003995 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11030 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (70.37%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002826 | Metagenome / Metatranscriptome | 527 | Y |
F003304 | Metagenome | 494 | N |
F003962 | Metagenome / Metatranscriptome | 459 | Y |
F011649 | Metagenome | 288 | Y |
F019450 | Metagenome / Metatranscriptome | 229 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209086_1000399512 | F002826 | N/A | MLVETKARLKWSRDILLTAREKLVLEKNRADRGRSVDIIQIITMVDAAALIAKEILEEIK |
Ga0209086_1000399516 | F003962 | N/A | VAYDEGQEGHVLSQDRDELKMAHKFISLLQLENAKLHGVVRLLGGLVDDMEANCSYEVFEAQWEGLTTYVKGLSEFFSTHQKALQSLQEACPAVWDQDEVDET |
Ga0209086_1000399523 | F019450 | AGGAGG | MESTKHSFAVYNSRGQFFARFTSYARALRWAVRNGMEWSAEIKKERDTQTK |
Ga0209086_1000399527 | F011649 | AGG | MEESLVEKGKNGRDIFTKELADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDVQLAGEKSWQAKAWILERGYNWAQPSARLAVTQDVTHGISSNLASLLAGIAVKKKAQVIDLQDVKAKPKLNSLYNSNCATSGTQDAVTTTQLKICKPRKVAMRRRKPRQESLAKYTTTPPATPPAPA |
Ga0209086_100039953 | F003304 | AGGA | MRKALVTQAFGDEWKKILELTKPRMEAYCKRHKIDFIALEKPLVDPVQYTKSAIGNIMATKGYDQVTFLDADVLVATDCPDIGEDAGVFCAFDEGAFLDRKLAMGKLAGAFGAIIDPRFYVNTGVFVISSKAVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVEEHFGLDRYTDAMCIHYAGQSVDLVKLAELIKADDAKLVELGR |
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