Scaffold Ga0209086

Basic Information
Taxon OID	3300027770 Open in IMG/M
Scaffold ID	Ga0209086_10000472 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027770 Open in IMG/M

Scaffold ID

Ga0209086_10000472 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34911
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (83.64%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

34911

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (83.64%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001538	Metagenome / Metatranscriptome	674	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012214	Metagenome	282	Y
F079997	Metagenome	115	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000047212	F000857	GGAG	MELNLNNEEAKVNEDYYTGGVLAGGLEGALIKNDKMFNEVKSGTWSQTFSTPNINYKVGSIDGERYVQYEQKNVESVKEYCKERREFYKMIGTTDNPIFAGTFEAMNLPKCFAHEISGKWFNNRPWDLIKQDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK
Ga0209086_1000047221	F012214	GGA	MSDYSRLRTPFTSMSFTPDVPSNALGPNEYNSGKNIEADVRCIKKIFGEIQIASTITDMPIFMEGGFRSETSWVYIVATRNSSSQGKWFMITATGISNITPGVGANPSVYISGYTEDVNITTSWVGNVFFINDTVQNPMYFLPTSNEISVTSDASWNYDVGVTSTRAGFVRNFCSPNVGNILISGNLTKVIGGTTYNYPTTVRWSQAFANQGYPATWEPTLSNVANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPISYQNSTAPIFGVRLLNQGRGLFNNNCWTNTDANVYGIDARDIWVFNGSEFSSLGNQKVKDYFFANLNSTYAGRMFMVNNTQKYQIEIYYPDLTSTGWCNKMLSWRYDLQVWNAPKDVQNACMGTEGPRWVDSSTDYFNLASRCVVYARGGVSSSKLIETSIGNSFVGSAIDSQFERTNIALQTANGPVPYSSKVYIHRVLPEIAGSGSINITVGGANSTAQTAVYGETGVTTIDTDTPWVPTQQNTFRTVALKFGSNDATDTWKVSALNLQASVTEDAF
Ga0209086_1000047233	F001538	GGA	VIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEMNKANELAKQKQTQLQDLAFEIYTKKVVQERLRMEIFTNRKLDILV
Ga0209086_100004725	F001059	AGGA	MATYDIDALKVDLPSAKELAQFVYDKTDGVVSLDLIGKPKEEQYIVAKNALEGKKVPAEYMTGFNPYVDKKDVIPEDPLRKMPKRSIDLPDEESQIHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEKIPVGEKLNKYGQTVPEKYSWIDPRTEERVLRNPDGTFSKEGRGVHTFLIGEKGGGVWNMIDKDIVSISAKNIADPWA
Ga0209086_1000047254	F079997	AGGA	MMPQIDIGARFANHRFKFCTKCDISKPPEGGIDMGHKWICQMCWNKRITGKYLRQNQEKN
Ga0209086_100004726	F006264	N/A	MEDPSNIFQNKLSSQAEVCARKTLEWLQKDLQGPHKLEPDEVYYLAYAAQILLDIRDSYGKK
Ga0209086_100004728	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRNPITQYKEVEGTRDQLRVFETLAGEKGLTAKRQDMRKIDVDLQGAMQEAMTPDESEAMQEPTNDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKTQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDYNIQQLAATCLKGAPFMDANSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMIPPEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTIDEAAKIMQAQAAKGPSAEQQETASKVELNKAKVQESGSVTALNMKKAQDIDTDDMFEMMAAKKGKLSAVQVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209086_10000472

Overview

Ecosystem & Geography

Associated Families

Sequences