NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10023017

Scaffold Ga0209770_10023017


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10023017 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2732
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F047059Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0209770_100230172F000868GGAGGMSSFLENENQMVIDATYAEIGEMLVEDWVNSNLDEGQLFADYRFAEMADNNYLKGRFNLFYDLNPGDQYYLECEEEC
Ga0209770_100230175F047059GGAMTKSSAFLEYMKIHKISLEQDLEDARNNIPLNEDEYFESDAFYMGAIEATEHLLSVATGIMNSSNERYNNE
Ga0209770_100230176F000263AGGMNNEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLSDAIEREEESEEAMDSMDRTRCEGALDTLAELYNLTYQLSFAIGARNEARG
Ga0209770_100230178F000441AGGAGGMRMSDNYINDQLSTAQKLLWGGSETENIEAHNIISKLIQDRVEQTDQI
Ga0209770_100230179F000852GGAMATKREYLKSQGITVGVRGRFSGAAKVALAEAEAKGIKFTAEAPVNKAK
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