| Basic Information | |
|---|---|
| Taxon OID | 3300027769 Open in IMG/M |
| Scaffold ID | Ga0209770_10014416 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3534 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001840 | Metagenome / Metatranscriptome | 627 | Y |
| F006260 | Metagenome / Metatranscriptome | 377 | Y |
| F009604 | Metagenome / Metatranscriptome | 315 | Y |
| F010081 | Metagenome / Metatranscriptome | 308 | Y |
| F031030 | Metagenome / Metatranscriptome | 183 | N |
| F045085 | Metagenome / Metatranscriptome | 153 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209770_100144161 | F009604 | N/A | MINCGCGNEIHPERVELGYKVCLNCGDKAALKNKKYGYMHFGHKTAGSIVVTSKQAVDNYLKVSKRMNK |
| Ga0209770_1001441611 | F010081 | N/A | MKEQIDSIIKKHCLKMQEVDNTKSIPMIVKELDGIVYTMYIELYGLRDIRADNYYLNSFTADNKKGHCC |
| Ga0209770_100144163 | F045085 | N/A | MNILYKLIDLTLGLIFGSVFAIGLILVLCIFFVVLIPFLFYFTVREVLKQLIVNK |
| Ga0209770_100144166 | F001840 | N/A | MKDTDSIFLICDCYEHGLLVEKFNDENEVSLSLFERGLKGRTLCWSERLRWCWQILRYGKPWSDFVILNTENQKQLKEFLNNECK |
| Ga0209770_100144167 | F031030 | AGGA | MGMFDDIVCKYSLPLPEDPKGYCNNRYQTKDFDNAMDLYEIREDGTLWLRCAEYEYTDGNPNAKSLIEKLPTRKETKVWWQQIFPITDTIRLYAYDSDTNDTYDYWIEYDVTFVDGKVTGAKLLEFTATDNSERKEQHRKDVEYWTNRQKFEYTLFYRLIGKPYNKTISFICRTIHKSATWITYKIWNVERFLKI |
| Ga0209770_100144168 | F006260 | N/A | MEKELTIKDKVNNPVVIQHDDLKFDGKNITIPGYYVSVLLDYVKDYKLDGVPQVDIEDYQSFRNFLYDIEEYKNQGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |