NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10001960

Scaffold Ga0209770_10001960


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10001960 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10440
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004306Metagenome / Metatranscriptome444Y
F011392Metagenome / Metatranscriptome291Y
F063369Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209770_1000196010F063369N/AMILTIIFSILSFILGVQLIIKLTTNELDRPYRIIRRQYYDVGKLKHECYEVQKQKQFVFIKYWSGVACEDSWDTTNVPSFENFDEAYDLLRKCKQQKTLNGIKDVVELEWTKYPIKIN
Ga0209770_1000196017F004306N/AMSLAQRELGQTFRIDKKKEMSNKHIEIIRFDNAKISVKEYIGERVLPSATYQPAIIKMIGARLLVINPDNQEEYYDCRYEDCTIKRMNG
Ga0209770_100019602F011392N/AMNLSIKELNELIYSLGIASHNGRFVNKDVNESLLEKLYSELNSKIVEEAIDEEVESDTYYVSNEEADEDYRVSMLQDEQRYESSVMNDYNVHLRKLKTRGYASQALLDYVDRKGAVSHKELETYYKQLTGSNSFSHILANLRIPYKNRKTQRYIAKEGKRYSNAKYIIKVANPSNWVVV
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