| Basic Information | |
|---|---|
| Taxon OID | 3300027769 Open in IMG/M |
| Scaffold ID | Ga0209770_10000859 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16013 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (48.28%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000922 | Metagenome | 833 | Y |
| F001964 | Metagenome | 610 | Y |
| F002227 | Metagenome | 580 | Y |
| F005388 | Metagenome / Metatranscriptome | 402 | N |
| F028148 | Metagenome | 192 | Y |
| F048938 | Metagenome / Metatranscriptome | 147 | Y |
| F071018 | Metagenome | 122 | N |
| F086618 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209770_1000085912 | F086618 | N/A | MKSIQRIETAVDNLLNGNLTHARKSARGLTYSDIFDWLTGPVGWTEKRSRACADYLIGRIDYRTYCNADR |
| Ga0209770_1000085913 | F028148 | N/A | MKTIHQVIQEIQCFDPAIRAFDAHDLPQSVRAYLHHNYRMDARLTDEEQQLVETSFEHFADNLRETFQDDPRPDATRFYLFDDGSLYVKTNAGPELWADAQVFVVERILPSMRLTRLEADLMREIGMDDQVSEVRDDFYSSFAHVLHRDCGIPHCDAREHWNAFSRQLSDSACESIVLGGGESGRAEGIRFASEYAVTNA |
| Ga0209770_1000085917 | F002227 | AGCAG | MKLTIQSKQNAQTIVDLFNAIITGECETPGVTPLSIYDEDKHICSITDADGNQILELIIEREQGDVLCSGTPDLETL |
| Ga0209770_1000085920 | F001964 | AGG | MSRNLFAPPKFKVQISGAIGWSDLKERVVRFETLEYTTRKEAETTAKELNPGEYTQGRIRVVPVEVPEDYDVYPVAERSKP |
| Ga0209770_1000085922 | F071018 | N/A | MEPLHHDADPNRSQVLAHIMANMQCDLGRASRAFNSMRHPKSKVLVFDHVHRMWKGCDWLPENENSKDAMILVEHRALERRVIAMDGELKKALKEIKRLNKQMADLYTDAKEMDDGTTNWFDEMKKTLEMTDEKPRKRRVQQPMNTTESLVAQAWS |
| Ga0209770_1000085928 | F048938 | AGGAGG | MNIEETKEAIHVMKAFVDGKDLEVLGPVGKWEPLYFPRWGWDDTKYRIKPTYVLRPWTADEVPLGMQARNREYPKTRWLIDRTSSEENRKDWCEKYEHSIDGGKTWLPCGVMEESK |
| Ga0209770_100008596 | F005388 | N/A | MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFREDLRQADMGSGSGAELLKRIGANRVIKNFRHVPNLFPPRYTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFIHAPEPIFTNQGMTIIFRRCTGALTQIICS |
| Ga0209770_100008598 | F000922 | GGA | MHKKFLRAFTWRAQKSIFERGKPELQAVAIGASNRQPLGMTAKEWERAKALYVSGIGWKAIGEQLKLNVDTLKSKASREGVTKLRKETEAIISSEISVRTEKSLEALSVLVRSKLAADAASTLERIEGYALDGIKDESLRETILGSVAKRSALVFGWSEQGEAASVSINLLGSMPDRVAEIQVTNESETK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |