| Basic Information | |
|---|---|
| Taxon OID | 3300027769 Open in IMG/M |
| Scaffold ID | Ga0209770_10000278 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29750 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (60.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000340 | Metagenome / Metatranscriptome | 1267 | Y |
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F001991 | Metagenome / Metatranscriptome | 607 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| F012668 | Metagenome / Metatranscriptome | 278 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209770_1000027813 | F000340 | N/A | MNWSDVLKAVIPIVVASLAWLLGEVSSFNTRLTKIEGQMPTLITPQGVPTDSPLSAEQRHKLKEEIYRDIHDLQVRTKLMEERQKK |
| Ga0209770_1000027819 | F001991 | AGG | MAIFNKNTLTQVSGFDNPIIAGELVYSQQTFWNLAFSNEGVAVDLTGATIDAQIIRRQLSDIKDTRYGLTFDISDYSPPPSPVALTITNRDDEEGTFTLVIDESAWGVISSDPQLDINAQECVGFSGRIKISFPAAGSTPAQDNIIFLLFLVRSDGVVN |
| Ga0209770_1000027824 | F002085 | GAGG | MNVITPVQNTNNIRYAQFVRVTTADEVFRFATTPAPVTVPAVDAEPFDAVGILMKVGDAQKDIKSTANETTFTLIGIDTAMLGWVLGLNVKGSKIEAWNGFFDVNGALITTGGSGGLYKFFTGYVSSFSISEEWLEDARQFVGTITVAASSIQLILQNRTAGRYTNNNSWQFFNSGDTSMNRVAFISTINYYFGKQR |
| Ga0209770_1000027825 | F000934 | AGTAGG | MSLNTILAISESVGINDQRFVGQMLSRNQRISTSEILTVVPFAFTMKPMNYLLYSENRDLLADLRYYDKSLTQYLNFGSTGWLNYIKYQGDMTSGQIASCQWQTASANKTLVLGSLPSISSSAYIVKKGDFCQVGLYSYIATSDVLRGSGSTVNIPVHRNLLAALASPVAAVIGQYGTTVSMGGSSYTGTTFPVILREYPTYSLMPITNDSFIQWSGNFVAFEAVL |
| Ga0209770_1000027833 | F012668 | N/A | MGIVRYENLTVKNVVNSTDSVGEYTTTLTDWFLTRGLVHDVSNTLRISERYRAYSDLVNITLNYTPNTKEMVDNQNLYAINWRGFDWRISDVRESNDRMKITFLCYRNDPVVPV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |