NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10000245

Scaffold Ga0209770_10000245


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10000245 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32277
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (36.84%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F001338Metagenome / Metatranscriptome719Y
F003583Metagenome / Metatranscriptome478Y
F042341Metagenome / Metatranscriptome158N
F054620Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209770_1000024521F042341N/AMSKPRPKSDPPAVKYAEPHFTFRILGKCKPSHAPGCRTPFGYCWKGYGDIHVDPRQPEHEMIDTVVHELIHDTYPFLDEDAVERGGEIIGAALWRLGYRRTVR
Ga0209770_1000024523F003583N/AMAKPSEQNASERNLVLAVALITGFAGLSAFASAYIAGYVLDQLQSTDALVMIVTDGGKLRSDSADLERNMSAATLALLSVRDLGWALAVGCIGVGVAVFLRLRRQNASTGKPEGSIDP
Ga0209770_1000024532F000957GAGGMSTFRHLDGMLGLLSELYEINERILTLDIVSNKAAIKSKRMEKLLKHYHEALSEDGATDIRLEAYAAAGGWVGVTYSYTFEGCEIAGSQVPRRV
Ga0209770_1000024550F001338N/AMSNQNEKTPLTDISQSGTYKLKLIRPKGTEKVKVWDDGTVSCRLFFVDDKGFCLSKNFSSKYGMALAMLVGKFSGKFVEEQLRIDATPAEFLNYIEPACGKTCLVGVEATPNGKEYNGKAQYNYKMTYAKGSQKPVVDDKPAAGAIEF
Ga0209770_100002458F054620N/AMGLFDAEWAADAAEILAEIPKAVSVHLGTGADVAFNVLISPPMVQQDLETGGFLNSTSFDVKFLRSDTDAHPGVVAFGSLITYAGKQYRVVAINDRPPSAWIIVRVQSKGGPA
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