| Basic Information | |
|---|---|
| Taxon OID | 3300027769 Open in IMG/M |
| Scaffold ID | Ga0209770_10000016 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 113800 |
| Total Scaffold Genes | 173 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 142 (82.08%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F000868 | Metagenome / Metatranscriptome | 853 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F004840 | Metagenome / Metatranscriptome | 421 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F008245 | Metagenome / Metatranscriptome | 336 | N |
| F011394 | Metagenome / Metatranscriptome | 291 | Y |
| F017995 | Metagenome / Metatranscriptome | 237 | Y |
| F021288 | Metagenome / Metatranscriptome | 219 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209770_10000016110 | F003422 | AGGA | MSVGWCIILGMSNELMSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTKLTCPCGRDTTLVSVEHATIQPTTTTKEEQMEETTIGSDALHSPAVEYNPNLLVTYKVIHGYSDPEFTTAKVSSLEWDLHNARQAQKTNGVLTNKISLVKDIITEAYSESEDQETLRAIAEALDIELTRQVEFTCTIEVSGTMEIDLLSDWGNDLEDEVTDNLYVDSQSGRIEIGDIEICHVREA |
| Ga0209770_10000016111 | F000311 | GAG | MYFELTAPDRLSMERAYWDAQITGLDPQAMTPLTFNIGTGSIEKVSRIRDKYNLSESYVSEYEATGYTGR |
| Ga0209770_10000016116 | F000868 | AGGCGG | MSFLENENQMVIDAEYSYIGEQLVEEWVNSNLDEGQLYADYRFAEMCDSNYLKGRFNQFYDLNPNDQYYVEWDEEK |
| Ga0209770_10000016117 | F021288 | AGGAG | MLGYTQKDLADMTYGVYQADLLIDADENPAIHNYLVTAHDFLQGLWAEGYFDHA |
| Ga0209770_10000016151 | F011394 | AGG | MDINQWTGELNKPVFYTKEMATKVRELKQPVHGLQMDIVKFPEFLAIRLYEGNFMQYGDSERMRIIDYIEMVKRVLESYGVRVELEGAKGERILR |
| Ga0209770_10000016167 | F000376 | AGGA | MTNIYQERAKECKCCGKHVPLPTVLREFNGTMMCPTTYANVLEYTRIWKQIGSRPTGSIRKHFSEYVQQVVESTIDKSDEANV |
| Ga0209770_100000164 | F008245 | GGAG | MSDKNTLELISEITEFNDLHEFMSDEQLDRALAILVKLIMNPEVPSAKAPMLIIELQAISAKLAILASFYSTIAKDKAGTVNNNKKNVYYSVKEALDRLVDALKYSARYSL |
| Ga0209770_1000001696 | F006744 | AGG | MNLEEFKAHVIAQREATKAEALSVLSATISTTKERENLNG |
| Ga0209770_1000001697 | F017995 | GGA | MAKVKELIEIVSAECDECGGAGFIFFGNELAYDVEPCDCIANVEDELTVDWVNE |
| Ga0209770_1000001698 | F004840 | N/A | MYKLTCAYDSNAPHWSAEYENEYGAWENFFLFTDWGMANEYSTVNLYTPSGKCYTKVFYRSGMVAVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |