NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209073_10002304

Scaffold Ga0209073_10002304


Overview

Basic Information
Taxon OID3300027765 Open in IMG/M
Scaffold IDGa0209073_10002304 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4192
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.8834Long. (o)-83.4195Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008101Metagenome / Metatranscriptome339Y
F039294Metagenome / Metatranscriptome164N
F085536Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209073_100023043F008101N/AMLSNVNFAQLLRPVGQMLEPLQLESFSLKIEEGNVSVQAQKREEQRSQRAAQVSLRVTWQLFRRKPSASTPEPQPSSGLLELHYTRDDIARMEMEAQSRRQAAGGRPEAHALSQVLRAVGAFVDQKQGRLTSVKMAGQDITIEYESALKQNLTEKFTVATLYDYWVKMYLKRRQRS
Ga0209073_100023044F085536GGAMIDEFRYTALLRPIGQMLEGLRIESFSVKPDSLGFVIRDKTRNRAQLTPREKAFLGELHSMHGASLNKEDALRLAAGVFEWHVTTVDLERFEAAGRARRHQDSGTPDSHSISQILRVVGNILDQKRHELYCISKDAEVVAVEYVSGDGKVANDEYSIPMLYDQWVRMYKRRASDEAGEQSAT
Ga0209073_100023045F039294AGCAGMTGTIGYAQPFRAIGQALETLNLKSFELEPTGADFLVRGHLPRPVIDLTKDALSPANLNTVWGNLASSSSENRSEQNEVTVPLLSSIELQYTSKDIDRLEQEGRANRTDPNRIPEHSSLSQVLRCVGAYLVQRRARLIKLCRGSDSITLEYQTSLGNILKETLVVGELYDLWVRMYLQRAARSTIY
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