| Basic Information | |
|---|---|
| Taxon OID | 3300027764 Open in IMG/M |
| Scaffold ID | Ga0209134_10078406 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1118 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012867 | Metagenome | 276 | Y |
| F014736 | Metagenome | 260 | Y |
| F050374 | Metagenome | 145 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209134_100784061 | F014736 | N/A | IVPDNVIKMWADPRFQILAEVDKLLTGSKIWAGMEYTYHPIHPVKYKPVAVKVRKALYDLQAEYGVLK |
| Ga0209134_100784063 | F012867 | GGAG | MKDFMYEQQRESITEEWGDEISQPLLSEKLNVPRVSYRIYYSKDNLTRRIFIFRGNCTPAETETMLGLGFTFASDGDTENIPDQSVAEVEQ |
| Ga0209134_100784064 | F050374 | GGA | MIDYKFIGWNNKDGSDKVWGAIYMEDRTNIRPKVLIFWGRRGKKLQTKMDREGWDLDKLIREKCNKGYRTLMDYELRQVYPEFLTDLEKTTMWALLKL |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |