| Basic Information | |
|---|---|
| Taxon OID | 3300027764 Open in IMG/M |
| Scaffold ID | Ga0209134_10000715 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8781 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (92.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F037203 | Metagenome | 168 | Y |
| F042218 | Metagenome | 158 | Y |
| F058795 | Metagenome | 134 | Y |
| F078404 | Metagenome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209134_100007153 | F078404 | GGAG | MRQHYKPEPVARPWADLLLAVSIGLVMGVLLAVYL |
| Ga0209134_100007155 | F058795 | GAG | MIHPLFEAILRPYTPPTPTPEAIDAAMMADKLADGYFQRSIDRAIKLEQQNAYPEN |
| Ga0209134_100007156 | F037203 | AGG | MQNRFQTLSEALLSEGISHMWNWRPIAYGETVSLTYDDGTRYGHYVSVYRDEKGLYERPVHYRRG |
| Ga0209134_100007157 | F042218 | AGG | MLRSPSISALKTLFGENAPRAKALLRMNREQLLRTPIGKARAAECYNPPSTQDIRMECLNALGDFYGVESLDTKKGECLYLNAGDTYTPTLIRFGSSYRITTWGDIAERHCTI |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |