NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209134_10000093

Scaffold Ga0209134_10000093


Overview

Basic Information
Taxon OID3300027764 Open in IMG/M
Scaffold IDGa0209134_10000093 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24413
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057200Metagenome136Y
F070990Metagenome / Metatranscriptome122N
F090370Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209134_1000009310F070990GAGMKLIWDAPQDLKTDRKFEEIILPNGVYTFTITKAEFAADKYKVNEFNKDGMSLKLWLDTEFQGNNKRIFATIGVDKPWDINTVVLACNLPAVKRGGSLNEQSLVDVEIKAKISQYTSKLGKVSNIVDHYLPAHPAATTKHADPVPVDDMDIPF
Ga0209134_1000009319F057200GGAMAPAKKPSLTPLQTTVLVGQLVGILIALGLYAVDLGRRDATLTRIASDTQELRIVALELQKAVVRGQAIDEKHTETIAALALKIDKMNLK
Ga0209134_100000936F090370N/AMTYADTILRISVRVAALGSERDAQRLREVVVWILAWEVRLKEFESVEQRLKQCEAERDHIRELELGLRPRISHNQDPKSKWVQ
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