NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10037074

Scaffold Ga0209088_10037074


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10037074 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2428
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012669Metagenome / Metatranscriptome278Y
F028145Metagenome / Metatranscriptome192N
F043356Metagenome / Metatranscriptome156N
F074576Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100370741F043356AGGMKIDISSIDRTQFMVHEHSLNGEIVHLIQPQHIGTKWTQDNKHMRSVVVNYAGEVISASFPKFTNLGENP
Ga0209088_100370742F012669N/AMSEQTYMKLKDAVKRPVFDAKTINRENPRFKSLVDSYQKWNQDDYFTEHRSTYENDIIDCLEEYDLDGFALAQHLSEYKYIEPDSELVHILEDVTFVKRSLETEMLSQWVMENFLTIPDDVVGKKVNVKQGIRKYENHYITGIKPETYQVTVSDKIDKNGGYIVGFENVTFL
Ga0209088_100370743F074576N/AMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNTK
Ga0209088_100370744F028145N/AMKLFCIFIVNLALSLFASILLYQLFKIDISPVTISLATIVIYICLPQRFHDWVSEK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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