NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10024200

Scaffold Ga0209088_10024200


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10024200 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3110
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009005Metagenome / Metatranscriptome324Y
F013298Metagenome / Metatranscriptome272Y
F093404Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100242002F013298N/AMTIREFYLANYPSDDMGDGINPNATFDGLWEIINKYGLIKDVYDYLYVYDTLIRERVFEKLAANKGCEYDVIYYQWLKNTAL
Ga0209088_100242005F009005GAGMSEQEMIQMATLLGLDEELISYAKQIQSQLSGDGDTAFWIDCLQMAYNEIILST
Ga0209088_100242006F093404N/AMGEQIAYNKCPHSIVELHENPAGEYYPVCQPIETPGLIRGEYIPIGSRLQYPTKWGRKKASTHILEFKIEDCKRTLENTQKELDKLQACLSSVQTWEDDNKE
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