NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10023424

Scaffold Ga0209088_10023424


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10023424 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3170
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F019647Metagenome / Metatranscriptome228N
F045094Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100234241F003786N/AMSNLTQYQPRNSDEQAIISARSNRIANLDQKDAYKQTLNVISSVFPMYGIDGDFAFYANIAKEIVKIFGQIAANEIEIAFRLFSAESLELDSDIKFYGKANMHTIGKILNGYMVYRRRIIASHDNEIAALRHQKDMEERGQKEREKLYAEFPTMIKDFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKKVK
Ga0209088_100234243F045094N/AMNDISKRFASYLMDDYKIKGTTEEDVDKAINRIFRFELLDDAQQVLFVEIMNEALDVPWIAEQLTGIWDRYNEEIYDCQKEDSYENH
Ga0209088_100234244F019647GAGMTAKKKIAMKITKGIVKYGAGAPREGQYGPSINILVTLIDDTQVRVYGKPGDVIERYKSGQAITLIDDNGKYKVLEESQTMPAPTGVAVIEQQIAEKPDLAAIVFEMSAIYTQAYIDIYNKINEAGVPQETATAATSTIFIQVFQKLR
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