NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10015996

Scaffold Ga0209088_10015996


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10015996 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3956
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002515Metagenome / Metatranscriptome552Y
F002598Metagenome / Metatranscriptome544Y
F007263Metagenome / Metatranscriptome354Y
F011487Metagenome / Metatranscriptome290Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1001599610F007263AGGMIKEYLDETEFYFIKDEMKYCCDESQFVHVCKAHGEQMGCYYCEFDYSKDCECEG
Ga0209088_1001599611F002598GAGGMATKLYTIQDLLIGKNYRSRNRHFEGEIVSATPRPAIWYGDNTEAYLIEVNARGLRNKFATIAVKVGE
Ga0209088_100159963F011487AGGAGMTYENDELYDEYYSTVCPTCKENSVDEYEEKCTHCLLEEMSITYNEDIALEMSLGLDY
Ga0209088_100159964F002515N/AMKKTDEELRRLMELRRSNAASAVPSKKAYNRRKCQSELIELKKYKGDPL
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