| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10007045 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6283 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000403 | Metagenome / Metatranscriptome | 1177 | Y |
| F000903 | Metagenome / Metatranscriptome | 843 | Y |
| F001897 | Metagenome / Metatranscriptome | 620 | Y |
| F016643 | Metagenome | 245 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_1000704514 | F016643 | N/A | MTIFNPIWRVKIAGIQYTNYVLANLSTTSGRTNIYEQANAGYVSLELINLDQSNIDIEINDSVTIELQDSTATFVSIFGGTVVDLGISIAASGVVGINQSVRITAVGALARLPKALTDGVLTQDFDGDQILTILTDLLVNSWNEVPAALTWATYDPTTQWQDAENTGLGEIDTPGSYELAARSSSTIDVYSLVSALATSGLGYIYEDAQGRISYASADHRSIYLATNGYTDVSAAQALANSLFVQTRAGDIRNEIVLKYGTNSNSEVTDTDATSVGLYGRLAQIITTTVKHQNDAEDQAAFYLTLRAYPQANFNQITFDLTNSEIDDADRDALINIFMGLPLRVTNLPLNMASGTYLGFVEGWSWRASYNSVSVTALLSPLAFSLQAMQWQDVAIAEQWNTISGSLNWADALVVA |
| Ga0209088_100070454 | F000903 | GGAG | MIDRIEEVQCMIAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYEYQPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGNAPKMHIVGWMPVAVAKKPRYKNTSQNNWTVPQVNLQPIETLIRSNYAHPAI |
| Ga0209088_100070455 | F000403 | AGG | MADFIEIINPRTMTCKLMLEGKIVAEYKVEQCDKCSRLVKFDNFGYQVGYDRTEKIIWFCGDCR |
| Ga0209088_100070456 | F001897 | AGGCGG | MAFMDNYEGNKERTDRWIATYPQGRLETHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAHGFLAAYSDKMRRWMVEDTCTSALMRVMALVMGGTEKATKEVMASVKTETPAADHDYWTTKFGEVPSYKTREEAEAADENGWAVNGVPMCSHGSMRWNQSKPDAPKAWAGYFCSEKAKEKQCKPSWYVLTSDGTFKPQV |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |