| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10004888 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7731 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (84.62%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017442 | Metagenome | 240 | Y |
| F017592 | Metagenome | 239 | Y |
| F044356 | Metagenome | 154 | Y |
| F064409 | Metagenome | 128 | N |
| F065547 | Metagenome | 127 | N |
| F085065 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_1000488816 | F044356 | AGGAG | MTEYFHPAYPRLYRYGGEYAPGLARLFGAHECHEGKAHDIVDGKCTKCGVHVRENK |
| Ga0209088_1000488819 | F065547 | N/A | MKQNKQPLHERLGLTIEEVLNRLILFGQLNHKYKQEHGESINPKHFEAVLHATQPKEKNA |
| Ga0209088_1000488820 | F064409 | AGGAG | MKLFKLKGVSKKYALRAAHYRRAARNQGVAGLAFDENALRELFDWESRGVGSVDKGKNGFAYGKWCVDLSVSMWVEDILKGDFCKAEFLETRIQKLHNKKKLDTITAAVFFPYADLLDRRRNT |
| Ga0209088_1000488822 | F017442 | AGGA | VLSENASASTTTPSKRKKKSINFYDPFKRVDPKLLEQMYRAAQKEKLKQLPEALL |
| Ga0209088_100048885 | F017592 | AGGAG | MMDDGDYGGIDEFMHYVTIAVLFLMTTVFLGAVVGLMYWAML |
| Ga0209088_100048888 | F085065 | GGGGG | MTKQELLALLKLLSAIESAMSVNRAQLPNYLFEQIDAAVLTLEREILK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |